{ "_id": "6a10137cacfb0bcc41c836cb", "Package": "EvalTest", "Title": "Tools for Evaluating Diagnostic Test Performance", "Version": "1.0.6", "Authors@R": "person(given = \"Nassim\", family = \"AYAD\", email = \"nassim.ayad.ph@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"https://orcid.org/0000-0002-1809-0935\",\naffiliation = \"Laboratory of Modeling and Biostatistics,\nPasteur Institute of Algeria\"))", "Maintainer": "Nassim AYAD ", "Description": "Evaluates diagnostic test performance using data from\nlaboratory or diagnostic research. It includes functions to\ncompute common performance indicators along with their\nconfidence intervals, and offers an interactive 'shiny'\napplication for comprehensive analysis including ROC curve\nvisualization and related metrics. It supports both binary and\ncontinuous test variables. It allows users to compute key\nperformance indicators and visualize Receiver Operating\nCharacteristic (ROC) curves, determine optimal cut-off\nthresholds, display confusion matrix, and export\npublication-ready plot. It aims to facilitate the application\nof statistical methods in diagnostic test evaluation by\nhealthcare professionals. Methodological details and references\nfor the computation of performance indicators are provided in\nthe package vignette.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev zlib1g-dev", "Repository": "https://nassimayad87.r-universe.dev", "Date/Publication": "2026-02-21 16:43:39 UTC", "RemoteUrl": "https://github.com/nassimayad87/evaltest", "RemoteRef": "HEAD", "RemoteSha": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 08:24:15 UTC", "User": "root" }, "Author": "Nassim AYAD [aut, cre] (ORCID: ,\naffiliation: Laboratory of Modeling and Biostatistics, Pasteur\nInstitute of Algeria)", "MD5sum": "3cdb4fe990ac9c7261e6a901ce2223e2", "_user": "nassimayad87", "_type": "src", "_file": "EvalTest_1.0.6.tar.gz", "_fileid": "5938b4b052beb79f7733930e7b1da8d1eea756f7264a325e9794c5f792798559", "_filesize": 650499, "_sha256": "5938b4b052beb79f7733930e7b1da8d1eea756f7264a325e9794c5f792798559", "_created": "2026-05-22T08:24:15.000Z", "_published": "2026-05-22T08:27:40.846Z", "_distro": "noble", "_jobs": [ { "job": 77343458973, "time": 171, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7156134210" }, { "job": 77343459026, "time": 146, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7156126680" }, { "job": 77343459035, "time": 99, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7156111914" }, { "job": 77343459023, "time": 119, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7156116996" }, { "job": 77342940907, "time": 212, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7156080779" }, { "job": 77343459046, "time": 146, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7156126692" }, { "job": 77343459107, "time": 110, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7156115918" }, { "job": 77343459051, "time": 104, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7156114086" }, { "job": 77343459069, "time": 115, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7156117242" } ], "_buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/nassimayad87/evaltest", "_commit": { "id": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "author": "Nassim AYAD ", "committer": "GitHub ", "message": "Update NEWS.md", "time": 1771692219 }, "_maintainer": { "name": "Nassim AYAD", "email": "nassim.ayad.ph@gmail.com", "login": "nassimayad87", "linkedin": "in/nassim-ayad-5b662b80", "orcid": "0000-0002-1809-0935", "description": "PharmD Biostatistician", "uuid": 190260482 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.1", "role": "Depends" }, { "package": "DT", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggpubr", "role": "Imports" }, { "package": "openxlsx", "role": "Imports" }, { "package": "pROC", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "shinydashboard", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "binom", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "nassimayad87", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-35", "n": 5 }, { "week": "2025-36", "n": 3 }, { "week": "2025-38", "n": 11 }, { "week": "2025-40", "n": 1 }, { "week": "2025-42", "n": 11 }, { "week": "2026-08", "n": 3 } ], "_tags": [ { "name": "v1.0.0", "date": "2025-08-28" }, { "name": "v1.0.2", "date": "2025-09-15" }, { "name": "v1.0.3", "date": "2025-10-15" }, { "name": "v1.0.3-alpha", "date": "2025-10-15" }, { "name": "v1.0.4", "date": "2025-10-16" }, { "name": "v1.0.5", "date": "2025-10-17" }, { "name": "v1.0.6", "date": "2026-02-21" } ], "_topics": [ "diagnostic-tests", "performance-test", "receiver-operating-characteristic", "roc", "sensitivity", "shiny-apps", "specificity", "youden" ], "_stars": 0, "_contributors": [ { "user": "nassimayad87", "count": 34, "uuid": 190260482 } ], "_userbio": { "uuid": 190260482, "type": "user", "name": "Nassim AYAD", "description": "PharmD Biostatistician" }, "_downloads": { "count": 173, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EvalTest" }, "_devurl": "https://github.com/nassimayad87/evaltest", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/EvalTest.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/nassimayad87/evaltest", "_realowner": "nassimayad87", "_cranurl": true, "_releases": [ { "version": "1.0.2", "date": "2025-09-14" }, { "version": "1.0.3", "date": "2025-10-15" }, { "version": "1.0.5", "date": "2025-11-17" }, { "version": "1.0.6", "date": "2026-02-20" } ], "_exports": [ "compute_indicators", "run_app" ], "_help": [ { "page": "compute_indicators", "title": "Compute diagnostic test indicators", "topics": [ "compute_indicators" ] }, { "page": "run_app", "title": "Launch the EvalTest Shiny application", "topics": [ "run_app" ] } ], "_readme": "https://github.com/nassimayad87/evaltest/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "base64enc", "binom", "boot", "broom", "bslib", "cachem", "car", "carData", "cellranger", "cli", "colorspace", "commonmark", "corrplot", "cowplot", "cpp11", "crayon", "crosstalk", "Deriv", "digest", "doBy", "dplyr", "DT", "evaluate", "farver", "fastmap", "fontawesome", "forecast", "Formula", "fracdiff", "fs", "generics", "ggplot2", "ggpubr", "ggrepel", "ggsci", "ggsignif", "glue", "gridExtra", "gtable", "highr", "hms", "htmltools", "htmlwidgets", "httpuv", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "MatrixModels", "memoise", "mgcv", "microbenchmark", "mime", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "openxlsx", "otel", "pbkrtest", "pillar", "pkgconfig", "polynom", "prettyunits", "pROC", "progress", "promises", "purrr", "quantreg", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "readxl", "reformulas", "rematch", "rlang", "rmarkdown", "rstatix", "S7", "sass", "scales", "shiny", "shinydashboard", "sourcetools", "SparseM", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "tinytex", "urca", "utf8", "vctrs", "viridisLite", "withr", "xfun", "xtable", "yaml", "zip", "zoo" ], "_vignettes": [ { "source": "introduction.Rmd", "filename": "introduction.html", "title": "Introduction to EvalTest", "author": "Nassim Ayad", "engine": "knitr::rmarkdown", "headings": [ "Table of Contents", "Introduction", "Installation", "Compute diagnostic test indicators", "Launching the application", "Using the application", "Statistical formulas", "Determining the optimal Cut-off Threshold (Top-left Method)", "Estimates", "Confidence intervals", "Citation", "References" ], "created": "2025-08-28 19:17:32", "modified": "2026-02-21 16:22:30", "commits": 8 } ], "_score": 4.477121254719663, "_indexed": true, "_nocasepkg": "evaltest", "_universes": [ "nassimayad87" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.6", "date": "2026-05-22T08:26:54.000Z", "distro": "noble", "commit": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "fileid": "385f7a3db8e2502adddcea9d000f0e464ee41d0db06ab0b05ed03a81727294d9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204" }, { "r": "4.6.0", "os": "linux", "version": "1.0.6", "date": "2026-05-22T08:26:27.000Z", "distro": "noble", "commit": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "fileid": "7e239b8784e25b52be5bf32485c57415228d4c1476f6c8922b189c9da5aee68c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204" }, { "r": "4.5.3", "os": "mac", "version": "1.0.6", "date": "2026-05-22T08:25:45.000Z", "commit": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "fileid": "a9a7749fccf698d74d4cb77c59ce79d247125dc987bf6c5f3a8bec30f0827658", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204" }, { "r": "4.6.0", "os": "mac", "version": "1.0.6", "date": "2026-05-22T08:25:59.000Z", "commit": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "fileid": "56469e21d7ea9f595965a5a511825c5672aa4f7fcbc9bd988410297914480f6b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.6", "date": "2026-05-22T08:26:55.000Z", "commit": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "fileid": "19fb40619f6fc5f0587c5a2a13c88fdc847eeceeb3dcf52b746ab2b1e05f4cf6", "status": "success", "buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204" }, { "r": "4.7.0", "os": "win", "version": "1.0.6", "date": "2026-05-22T08:25:40.000Z", "commit": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "fileid": "6d3a7d6a6787476fca670d6413b7471b72760ad94a0b9cfdf182337baca056f7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204" }, { "r": "4.5.3", "os": "win", "version": "1.0.6", "date": "2026-05-22T08:25:37.000Z", "commit": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "fileid": "3c05144b5bb1970558e5e0afc7e5642ff1f6a093dacb373baad0cf2bc3bacac4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204" }, { "r": "4.6.0", "os": "win", "version": "1.0.6", "date": "2026-05-22T08:25:46.000Z", "commit": "b2c1ffeb67a22fd5f4eb32f86a8df0d9ac0c70a9", "fileid": "3d0a83ee8e859b13dfe6897fe0d152daaad31f8f4b42f4978f7a836923adf6dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/nassimayad87/actions/runs/26276791204" } ] }